blackbox: A Python module for parallel optimization of expensive black-box functions
What is this?
Let’s say you work with computationally intensive system and you want to find optimal parameters of that system. If you can construct a simple Python function, that takes a set of trial parameters, performs evaluation, and outputs some scalar measure of how good chosen parameters are (in some sense), then the problem becomes a mathematical optimization and can be automated. However, a corresponding function is expensive (one evaluation can take hours) and is a black-box (has input-output nature). Therefore, there is a need for a method that can optimize such functions using limited number of function evaluations.
blackboxis a minimalistic and easy-to-use Python module that efficiently searches for a global optimum (minimum) of an expensive black-box function. It works based on a given limited number of function evaluations and makes an efficient use of them to find the best solution it can. It scales on multicore CPUs by performing several function evaluations in parallel, which results in a speedup equal to a number of cores available.
A mathematical method behind the code is described in this arXiv note .
How do I represent my objective function?
It simply needs to be wrapped into a Python function. An external application can be accessed using system call:
def fun(par): # modifying text file that contains design/model parameters ... # performing simulation in external package os.system(...) # reading results, calculating output ... return output
par is a vector of parameters (a Python list is OK) and
output is a non-negative scalar measure to be minimized .
How do I run the procedure?
Just like that (minimizing a function):
from blackbox import * def fun(par): ... return output if __name__ == '__main__': search( f=fun, # given function resfile='output.csv', # .csv file where iterations will be saved box=np.array([[-1.,1.],[-1.,1.]]), # range of values for each parameter cores=4, # number of cores to be used n=8, # number of function calls on initial stage (global search) it=8 # number of function calls on subsequent stage (local search) )
How about results?
Iterations are saved in .csv file with the following structure:
|1st parameter||2nd parameter||…||n-th parameter||Function value|
Important: For a number of reasons all parameters (as well as a function value) are normalized into range [0,1]. If a given parameter has range [a,b], then 0 corresponds to a and 1 corresponds to b. Simple linear rescaling can be applied to obtain an absolute value needed.
Data from .csv file can be visualized using provided Mathematica script
Paul Knysh ( email@example.com )
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